Question for cluster setting and Failed running xinteract

CPAS Forum (Inactive)
Question for cluster setting and Failed running xinteract guru  2007-05-07 01:57
Status: Closed
Assigned To: brendanx
 
hello,

I'm going to install CPAS web server in our linux cluster master node. but I cannot find a step-by-step installation document in caps supprot board. Would you please provide some information for cluster setting?

I have 8 dual processor(Itenium)machines on RedHat AS3 (x86_64).

and, I have installed CPAS 2.0 another web server(this is not a cluster). and then I ran a dataset, but unfortunately I got an error message as below

07 May 2007 10:07:47,948 INFO : X! Tandem search for SmallICAT.mzXML
07 May 2007 10:07:47,952 INFO : =======================================
07 May 2007 10:07:48,230 INFO : tandem.exe output
07 May 2007 10:07:48,230 INFO : =======================================
07 May 2007 10:07:48,236 INFO : running: tandem.exe input.xml
07 May 2007 10:07:48,257 INFO :
07 May 2007 10:07:48,257 INFO : X! TANDEM 2 (2007.04.01.1)
07 May 2007 10:07:48,257 INFO :
07 May 2007 10:07:51,879 INFO : Loading spectra .. loaded.
07 May 2007 10:07:51,879 INFO : Spectra matching criteria = 2367
07 May 2007 10:07:51,879 INFO : Pluggable scoring enabled.
07 May 2007 10:07:51,880 INFO : Starting threads . started.
07 May 2007 10:07:51,880 INFO : Computing models:
07 May 2007 10:08:02,830 INFO :     S    sequences modelled = 0 ks
07 May 2007 10:08:02,855 INFO : Model refinement:
07 May 2007 10:08:02,855 INFO : Creating report:
07 May 2007 10:08:02,893 INFO :     initial calculations ..... done.
07 May 2007 10:08:02,893 INFO :     sorting ..... done.
07 May 2007 10:08:02,992 INFO :     finding repeats ..... done.
07 May 2007 10:08:02,995 INFO :     evaluating results ..... done.
07 May 2007 10:08:02,996 INFO :     calculating expectations ..... done.
07 May 2007 10:08:04,637 INFO :     writing results ..... done.
07 May 2007 10:08:04,649 INFO :
07 May 2007 10:08:04,649 INFO : Valid models = 7
07 May 2007 10:08:04,649 INFO :
07 May 2007 10:08:04,649 INFO :
07 May 2007 10:08:04,812 INFO : Tandem2XML output
07 May 2007 10:08:04,812 INFO : =======================================
07 May 2007 10:08:04,812 INFO : running: Tandem2XML /home/shoo/CPAS/xtandem/1/SmallICAT.work/SmallICAT.xtan.xml /home/shoo/CPAS/xtandem/1/SmallICAT.work/SmallICAT-raw.pep.xml
07 May 2007 10:08:05,330 INFO : xinteract output
07 May 2007 10:08:05,330 INFO : =======================================
07 May 2007 10:08:05,330 INFO : running: xinteract -Opt -nR "-NSmallICAT.pep.xml" "/home/shoo/CPAS/xtandem/1/SmallICAT.work/SmallICAT-raw.pep.xml"
07 May 2007 10:08:05,348 INFO :
07 May 2007 10:08:05,348 INFO : /home/cpas/labkey/bin/tpp/bin/xinteract (TPP v3.0 SQUALL rev.2, Build 200705032136)
07 May 2007 10:08:05,349 INFO : error, cannot parse input file "-NSmallICAT.pep.xml"
07 May 2007 10:08:05,351 ERROR: Failed running xinteract.

Do you have any idea for this error?

Thanks for taking your time to read my question.
 
 
brendanx responded:  2007-05-08 08:37
We discovered this issue on the Macintosh after shipping 2.0, but thought it only affected the Mac, and so did not ship a patched version.

I have attached a ms2.module file that should fix the problem.

For the cluster, what scheduler are you running?

--Brendan
 
guru responded:  2007-05-08 22:33
I appreciate your kind respones to my inquiry concerning our work.

Our cluser is running with TORQUE(version 2.1.8).

-Sungyong