This topic is under construction for the 19.1 release of LabKey Server. For current documentation of this feature, click here.

Premium Feature — Available in the Professional, Professional Plus, and Enterprise Editions. Learn more or contact LabKey.

Various metrics can be used to track quality and investigate trends in different types of data. In Luminex assays and Panorama folders, Levey-Jennings plots offer built in support. Quality Control (QC) Trend Reports are a way to perform this type of quality control on other types of data, such as GPAT and file-based assay data.

QC Trend Reports are enabled on servers with the Premium module installed.

Options for Defining QC Trend Reports

Open the UI for defining the QC trend report in one of three ways.

Option 1. Associate with a GPAT or File-based Assay

If you will be running your QC Trend Reports over assay data, you can define them from the assay grid header menu. This option is supported for either the general purpose assay design (GPAT), or a file-based assay. Associate QC Trend Reports with assays as follows:

  • Select (Admin) > Manage Assays.
  • In the Assay List, click the name of your assay.
  • Select Manage Assay Design > Create QC trend report.

Continue to define your QC trend report.

Option 2. Use for Other Types of Data

You can also define a QC Trend Report from the (Charts) menu of a data grid:

  • Open the (Charts and Reports) menu.
  • Select Create QC Trend Report.

Using this method will typically prepopulate the schema and query you are viewing when you open the QC Trend Report editor.

Continue to define your QC trend report.

Option 3. Define in Schema Browser

If neither of the above options is suitable, you can also manually define the report in the schema browser as follows:

  • Select (Admin) > Developer Links > Schema Browser.
  • Choose the "qctrendreport" schema.
  • Select the "QCTrendReport" built in query.
  • Click View Data.
  • Click (Insert New Row).

Continue to define your QC trend report.

Define QC Trend Report

QC Trend reports are defined using a two-panel wizard.

Details

Provide the name and other details.

  • Enter a Label, which must be unique to the folder.
  • Select a Schema from the dropdown. This will populate the "Query" dropdown. If you started this report from a grid of data, the schema and query will be prepopulated with defaults.
  • Select the Query within the selected schema.
  • Select the View from any defined on that query.
  • If the Report should be associated with a specific Assay, select it here. When attached to an assay, the report will be available via the "View QC Trend Report" menu in assay data headers.
  • Check the Shared box to share the report with other users granted access to this folder. See the Shared Reports section below for details.
  • Click Next to continue.

Configuration

Select columns to use in the trend report:

Select the following:
  • Date: Choose among columns of type "Date" in the selected query and view. Used for sorting and joining rows in the report and with guide sets.
  • X-Axis Label: This column will be used for the tick mark display along the x-axis.
  • Graph Parameter(s): Select one or more columns to be used for grouping/filtering in the trend report. They will be shown in the UI in the order selected here.
  • Metric(s): Define the metrics to be tracked by the trend report. Options are the columns of type "Numeric" which are marked as measures in the domain definition.
  • Click Save.

You can now use your QC Trend Report.

Defining Metrics

To define a metric for use in a QC trend report, edit the domain definition, i.e the list, dataset, or assay definition. In an assay definition, there are both "Run" fields and "Data" fields. Metrics should be defined in the Run Fields section.

Select the field to use as a metric, then click the Reporting tab. Check the box for Measure and save the definition.

Learn more about setting field properties here.

Edit QC Trend Reports

To edit a QC trend report, click the (Configure) icon above the report grid.

Share Reports

When you define a QC Trend report, you will be able to see it on the (Charts and Reports) menu for the appropriate dataset, or on the View QC Trend Report menu above assay run data. To make the report available to others, check the Shared box.

The following table shows the container permission roles required to perform various tasks on a shared vs. non-shared report.

Role(s)Can view?Can create?Can update?Can share?Can set as assay report?Can delete?
Readerprivate + sharedyesprivatenonoprivate
Reader + Assay Designerprivate + sharedyesprivatenoyesprivate
Authorprivate + sharedyesprivatenonoprivate
Author + Assay Designerprivate + sharedyesprivatenoyesprivate
Editorprivate + sharedyesprivate + shared non-assayyesnoprivate + shared non-assay
Editor + Assay Designerprivate + sharedyesprivate + sharedyesyesprivate + shared
Adminprivate + sharedyesprivate + sharedyesyesprivate + shared

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