| Problems with Spectral Counts Compare in 9.2 | edwin.lowe | 2009-10-06 20:21 | |||||||||||||||||||||||||||||||||
| Status: Closed | |||||||||||||||||||||||||||||||||||
I recently upgraded 9.2 and am having problems with using the Compare tool and Spectral Counts. I was previously running 9.1 with the the data in the older PostgreSQL 8.2 server and dumped and reimported my data into PostgreSQL 8.3 when i updated. I get the following error An unexpected error occurred java.lang.NullPointerException [Show more details] org.labkey.api.util.UnexpectedException: java.lang.NullPointerException:java.lang.NullPointerException at org.labkey.api.data.AsyncQueryRequest.waitForResult(AsyncQueryRequest.java:106) at org.labkey.api.data.Table.selectForDisplayAsync(Table.java:1332) at org.labkey.api.data.RenderContext.selectForDisplay(RenderContext.java:347) at org.labkey.api.data.RenderContext.getResultSet(RenderContext.java:228) at org.labkey.api.data.DataRegion.getResultSet(DataRegion.java:610) at org.labkey.api.data.DataRegion.getResultSet(DataRegion.java:594) at org.labkey.api.data.DataRegion._renderTable(DataRegion.java:683) at org.labkey.api.data.DataRegion.render(DataRegion.java:1915) at org.labkey.api.data.DataRegion.renderTable(DataRegion.java:668) at org.labkey.api.view.GridView._renderDataRegion(GridView.java:71) at org.labkey.api.view.DataView.renderView(DataView.java:124) at org.labkey.api.view.DataView.renderView(DataView.java:31) at org.labkey.api.view.WebPartView.renderView(WebPartView.java:569) at org.labkey.api.view.WebPartView.renderInternal(WebPartView.java:180) at org.labkey.api.view.HttpView.render(HttpView.java:135) at org.labkey.api.view.HttpView.render(HttpView.java:117) at org.labkey.api.view.HttpView.include(HttpView.java:536) at org.labkey.api.query.QueryView.renderDataRegion(QueryView.java:1049) at org.labkey.api.query.QueryView.renderView(QueryView.java:885) at org.labkey.api.view.WebPartView.renderView(WebPartView.java:569) at org.labkey.api.query.QueryView.renderView(QueryView.java:910) at org.labkey.api.view.WebPartView.renderInternal(WebPartView.java:180) at org.labkey.api.view.HttpView.render(HttpView.java:135) at org.labkey.api.view.HttpView.render(HttpView.java:117) at org.labkey.api.view.HttpView.include(HttpView.java:536) at org.labkey.jsp.compiled.org.labkey.api.view.template.CommonTemplate_jsp._jspService(CommonTemplate_jsp.java:204) at org.labkey.api.view.JspView.renderView(JspView.java:119) at org.labkey.api.view.WebPartView.renderInternal(WebPartView.java:180) at org.labkey.api.view.HttpView.render(HttpView.java:135) at org.labkey.api.view.HttpView.render(HttpView.java:117) at org.labkey.api.action.SpringActionController.renderInTemplate(SpringActionController.java:420) at org.labkey.api.action.SpringActionController.handleRequest(SpringActionController.java:344) at org.labkey.api.module.DefaultModule.dispatch(DefaultModule.java:726) at org.labkey.api.view.ViewServlet.service(ViewServlet.java:140) at javax.servlet.http.HttpServlet.service(HttpServlet.java:802) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.labkey.api.data.TransactionFilter.doFilter(TransactionFilter.java:36) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.labkey.core.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:124) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.labkey.api.module.ModuleLoader.doFilter(ModuleLoader.java:651) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.labkey.api.security.AuthFilter.doFilter(AuthFilter.java:101) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148) at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869) at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664) at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527) at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80) at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684) at java.lang.Thread.run(Unknown Source) Caused by: java.lang.NullPointerException at org.labkey.api.query.AliasManager.legalNameFromName(AliasManager.java:70) at org.labkey.api.query.AliasManager.makeLegalName(AliasManager.java:96) at org.labkey.query.QueryServiceImpl.getSelectSQL(QueryServiceImpl.java:643) at org.labkey.api.data.Table.getSelectSQL(Table.java:1164) at org.labkey.api.data.Table.selectForDisplay(Table.java:1323) at org.labkey.api.data.Table.access$300(Table.java:52) at org.labkey.api.data.Table$2.call(Table.java:1336) at org.labkey.api.data.Table$2.call(Table.java:1334) at org.labkey.api.data.AsyncQueryRequest$1.run(AsyncQueryRequest.java:69) ... 1 more request attributes LABKEY.StartTime = 1254885570546 LABKEY.container = /Jay Kocharunchitt/Plasmid Data LABKEY.OriginalURL = http://proteome.csl.utas.edu.au:8080/labkey/ms2/Jay%20Kocharunchitt/Plasmid%20Data/spectraCount.view?runList=127&spectraConfig=SpectraCountProteinPP&peptideFilterType=peptideProphet&peptideProphetProbability=0.8 LABKEY.action = spectraCount org.springframework.web.servlet.DispatcherServlet.CONTEXT = org.springframework.web.context.support.XmlWebApplicationContext@5f39b0: display name [MS2 WebApplicationContext]; startup date [Tue Oct 06 16:22:52 EST 2009]; parent: org.springframework.web.context.support.XmlWebApplicationContext@1babddb LABKEY.controller = ms2 WebPartView.frame = DIV LABKEY.RequestURL = /labkey/ms2/Jay%20Kocharunchitt/Plasmid%20Data/spectraCount.view?runList=127&spectraConfig=SpectraCountProteinPP&peptideFilterType=peptideProphet&peptideProphetProbability=0.8 core schema database configuration Server URL jdbc:postgresql://xxx.yyy.zzz.au:5432/labkey Product Name PostgreSQL Product Version 8.3.8 Driver Name PostgreSQL Native Driver Driver Version PostgreSQL 8.3 JDBC3 with SSL (build 604) |
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