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Can't execute MzXML2Search binary on Mac OSX

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Can't execute MzXML2Search binary on Mac OSX i.cooke  2010-02-22 19:18
Status: Closed
 
I've just installed labkey server 9.3 by compiling from source on MacOSX. When I go to run a Mascot search I get a weird error though. I've pasted the full error log below .. it fails when trying to run the MzXML2Search binary with the line.

/Users/iracooke/Sources/labkey/build/deploy/bin/MzXML2Search: cannot execute binary file

I've verified that MzXML2Search can be run using a relative path from the bin directory, but it always fails when I run it with an absolute path.

OK, this was a simple case of having another copy of the file (that does work) in my path. I've deleted the remainder of the question because it's no longer relevant.
 
 
Brian Connolly responded:  2010-02-24 09:33
Have you attempted putting the directory "/Users/iracooke/Sources/labkey/build/deploy/bin/" on your path? I have experienced similar problems with previous versions of the TPP and this helped.

If this does not work or you would like to investigate further, I recommend posting your question to the TPP mailing list (http://groups.google.com/group/spctools-discuss?pli=1) as MzXML2Search is part of the TPP.

Thank you and sorry I cannot be of more help.

Brian