The following tables describe the available user interface panels, or "web parts". Not all web parts are available in all configurations.
| Web Part Name | Description | Documentation |
|---|
| Assay Batches | Displays a list of batches for a specific assay | Step 4: Work with Assay Data |
| Assay List | Provides a list of available assay designs and options for managing assays | Assay List |
| Assay Results | Displays a list of results for a specific assay | Step 4: Work with Assay Data |
| Assay Runs | Displays a list of runs for a specific assay | Step 4: Work with Assay Data |
| Assay Schedule | Define and track expectations of when and where particular assays will be run | Manage Assay Schedule |
| CDS Management | Management area for the Dataspace folder type | Collaborative DataSpace Case Study |
| Contacts | List of users on this server | Contacts |
| Custom Protein Lists | Shows protein lists that have been added to the current folder | Using Custom Protein Annotations |
| Data Classes | Capture capture complex lineage and derivation information, especially when those derivations include bio-engineering systems such as gene-transfected cells and expression systems. | DataClasses |
| Data Pipeline | Configure the data pipeline for access to data files and set up long running processes | Data Processing Pipeline |
| Data Transform Jobs | Provides a history of all executed ETL runs | ETL: User Interface |
| Data Transforms | Lists the available ETL jobs, and buttons for running them | ETL: User Interface |
| Data Views | Data browser for reports, charts, views | Data Views Browser |
| Datasets | Datasets included in the study | Manage Datasets |
| Enrollment Report | Simple graph of enrollment over time in a visit based study | Enrollment Report |
| Experiment Runs | List of runs within an experiment | Experiment Terminology |
| Feature Annotation Sets | Sets of feature/probe information used in microarray assays | Expression Matrix Assay Tutorial |
| Files | The file repository panel. Upload files for sharing and import into the database | Files |
| Flow Analyses | List of flow analyses that have been performed in the current folder | Step 4: View Results |
| Flow Experiment Management | Tracks setting up an experiment and analyzing FCS files | Step 1: Set Up a Flow Folder |
| Flow Reports | Create and view positivity and QC reports for Flow analyses | Flow Reports |
| Flow Scripts | Analysis scripts each holding the gating template, rules for the compensation matrix, and which statistics and graphs to generate for an analysis | Step 1: Define a Compensation Calculation |
| Genotyping Analyses | Genotyping analyses run in the current project | Example Workflow: LabKey and Galaxy |
| Genotyping Overview | Options for configuring and managing a genotyping project | Set Up a Genotyping Dashboard |
| Immunization Schedule | Show the schedule for treatments within a study | Manage Study Products |
| Issues List | Track issues for collaborative problem solving | Step 3: Track Issues |
| Issues Summary | Summary of issues in the current folder's issue tracker | Using the Issue Tracker |
| List - Single | Displays the data in an individual list | Manage Lists |
| Lists | Displays directory of all lists in the current folder | Manage Lists |
| Manage Peptide Inventory | Search and pool peptides via this management interface | Peptide Search |
| Mass Spec Search (Tabbed) | Combines "Protein Search" and "Peptide Search" for convenience | Protein Search |
| Messages | Show messages in this folder | Messages |
| Messages List | Short list of messages without any details | Messages |
| Microarray Runs | List of microarray runs | Microarray Assay Tutorial |
| MS1 Feature Search | Search by mass-to-charge ratio or retention time | MS1 |
| MS1 Runs | List of MS1 runs | MS1 |
| MS2 Runs | List of MS2 runs | Explore the MS2 Dashboard |
| MS2 Runs Browser | Folder browser for MS2 runs | View, Filter and Export All MS2 Runs |
| MS2 Runs with Peptide Counts | An MS2Extensions web part adding peptide counts with comparison and export filters | Peptide Search |
| MS2 Sample Preparation Runs | List of sample preparation runs | Explore the MS2 Dashboard |
| Pending MAGE-ML Files | List of pending microarray data files | Microarray Assay Tutorial |
| Peptide Freezer Diagram | Diagram of peptides and their freezer locations | Peptide Search |
| Peptide Search | Search for specific peptide identifications | Peptide Search |
| Pipeline Files | A management interface for files uploaded through the pipeline | Data Processing Pipeline |
| Projects | Provides a list of projects on your site | Projects Web Part |
| Protein Search | Dashboard for protein searches by name and minimum probability | Step 6: Search for a Specific Protein |
| Query | Shows results of a query as a grid | Query Web Part: Display a Query |
| Report | Display the contents of a report or view | Report Web Part: Display a Report or Chart |
| Run Groups | List of run groups within an analysis. | Run Groups |
| Run Types | Links to a list of experiment runs filtered by type | Experiment Terminology |
| Sample Sets | Sets of samples that have been uploaded for inclusion in assays/experiments | Sample Sets |
| Search | Text box to search wiki & other modules for a search string | Search |
| Sequence Runs | List of genotyping sequencing runs | Example Workflow: LabKey and Galaxy |
| Specimen Report | Summary report on the specimen repository | Generate Specimen Reports |
| Specimen Search | Search the specimen repository | View Specimen Data |
| Specimen Tools | Buttons for common specimen repository tasks | Step 3: Request Specimens (User) |
| Specimens | List of specimens by type | View Specimen Data |
| Study Data Tools | Button bar for common study analysis tasks. Buttons include, Create A New Graph, New Participant Report, etc. | Step 2: Study Data Dashboards |
| Study List | Displays basic study information (title, protocol, etc.) in top-down document fashion. | Study Tour |
| Study Overview | Management links for a study folder. | Study Tour |
| Study Protocol Summary | Overview of a Study Protocol (number of participants, etc). | Study |
| Study Schedule | Tracks data collection over the span of the study. | Study Schedule |
| Participant Details | Dashboard view for a particular study participant. | Study Tour |
| Participant List | Interactive list of participants. Filter participants by group and cohort. | Study Tour |
| Survey Designs | A list of available survey designs/templates to base surveys on. | Survey Designer: Basics |
| Surveys | A list of survey results, completed by users. | Survey Designer: Basics |
| Vaccine Design | Define immunogens, adjuvants, and antigens you will study | Create a Vaccine Study Design |
| Vaccine Study Protocols | List of current vaccine protocols (deprecated interface) | Create a Vaccine Study Design |
| Views | List of the data views in the study, including R views, charts, SQL queries, etc. | Customize Grid Views |
| Wiki | Displays a wiki page. | Wikis |
| Workbooksmakecolumnwider | Provides a light-weight container for managing smaller data files. | Workbooks |
