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Libra ratios visible?

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Libra ratios visible? mboehmer  2011-08-29 08:30
Status: Closed
 
I just installed Labkey 11.2 and I am quite excited about the new features. I tested Libra quantification for some iTRAQ data that we did and it seems to be working, after depositing a condition file and using the following commands in the X!Tandem search:

    <note label="pipeline quantitation, libra config name" type="input">libra</note>
    <note label="pipeline quantitation, libra normalization channel" type="input">1</note>

Now I am wondering whether these quantification results can be displayed in the standard view in Labkey? So far I see them only in the generated Excel file.

Thanks
 
 
jeckels responded:  2011-08-29 09:08
In LabKey Server 11.2, the MS2 pipeline supports running Libra. It doesn't import the quantitation results, which end up being written into the .pep.xml and prot.xml files, as well as the .libra.tsv (called quantitation.tsv in a default Libra invocation, but we rename to avoid conflicts with other files processed in the same directory).

Version 11.3 will support importing the results into the LabKey database and showing in all of the standard MS2 views. Even though we just posted 11.2 installers, this work has already been completed.

Thanks,
Josh