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Grab fragment ion intensity from search results

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Grab fragment ion intensity from search results pyan  2010-05-03 15:05
Status: Closed
 
Hi,

I run x!Tandem through CPAS. I would like to export the intensity value for each matched fragment ion.

I know if I click the peptide, it will open a new window showing the detailed info with spectral graph. But is there an easy way for me just to download the intensity values?

Thanks,

Ping
 
 
Brian Connolly responded:  2010-05-04 09:31
Title: Grap fragment ion intensity from search results
Ping,

I am sorry to say that CPAS does not have method to download/export the intensity values for a set of peptides. The intensity values are only exposed on a per peptide basis on the page which shows the peptide detailed info and the spectral graph.

Is this a feature you would like to see added to CPAS as you expect to be using the intensity values in your current and future research?

Thank you,

Brian Connolly
 
pyan responded:  2010-05-07 12:01
Hi Brian,

Thanks for responding my message.

Yes, it will be great that we can download intensity values associating with peptides.

Thanks,

Ping