The following topics cover different aspects of working with MS2 data:

• Search MS2 Data Via the Pipeline: Upload MS2 data for analysis, performing processing steps at the same time.
• configMs2search: Select specific search engine.
• Search and Process MS2 Data: Configure parameters.
• Import Existing Analysis Results
• Trigger MS2 Processing Automatically
• Set Proteomics Search Tools Version
• Explore the MS2 Dashboard
• View an MS2 Run
• Compare MS2 Runs
• Export MS2 Runs
• View, Filter and Export All MS2 Runs

Related Topics

• Proteomics Tutorial: Explore the basics using sample data in our tutorial.
• Run Groups